@pipeworx/mcp-mgnify

MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they are classified under, and the ~57,000 MAGs and isolate genomes in its species-level genome catalogues, with completeness, contamination and GTDB taxonomy for e

Installation

MCP client config (paste into mcp.json)

{
  "mcpServers": {
    "npm-pipeworx-mcp-mgnify": {
      "command": "npx",
      "args": [
        "@pipeworx/mcp-mgnify"
      ]
    }
  }
}

Agent install prompt

Copy and paste into Cursor / Claude / other agents to install this MCP for you

Please read this MCP repository and install it into my current environment:
https://www.npmjs.com/package/@pipeworx/mcp-mgnify

Known working client config (can write into mcp.json):
{
  "mcpServers": {
    "npm-pipeworx-mcp-mgnify": {
      "command": "npx",
      "args": [
        "@pipeworx/mcp-mgnify"
      ]
    }
  }
}

Please: 1) check README for deps and env vars; 2) write config for my client; 3) if secrets are missing, tell me what to fill — do not invent values.

GitHub

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